Potato Genome Sequencing Consortium Data Release
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BLAST
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Potato Genome Sequencing Consortium BLAST Server
Select type of BLAST Search
blastn
blastp
blastx
tblastn
tblastx
Search a nucleotide database using a nucleotide query
Enter Query Sequence
Enter DNA FASTA sequence:
or upload a file of DNA FASTA sequence:
Choose Database to Search
Select the BLAST database you would like to search:
Solanum phureja DM Transcripts (v3.4)
Solanum phureja DM CDS (v3.4)
Solanum phureja DM Loci (v3.4)
Solanum phureja DM Nonredundant CDS (v3.4)
Solanum phureja DM Pseudomolecules (v3_2.1.10)
Solanum phureja DM Pseudomolecules - Unanchored Superscaffolds (v3_2.1.10)
Solanum phureja DM scaffolds (v3)
Solanum phureja DM superscaffolds (v3)
Solanum phureja DM Chloroplast
Solanum phureja DM Mitochondrion
Solanum tuberosum RH Chloroplast
Solanum tuberosum RH Mitochondrion
Solanaceae PUTs
Solanum Potato BACs
All Solanum phureja Genbank non-EST Seqs
All Solanum tuberosum Genbank non-EST Seqs
Arabidopsis thaliana Loci (TAIR 10)
Arabidopsis thaliana Transcripts (TAIR 10)
Arabidopsis thaliana CDS (TAIR 10)
BLAST databases last updated on Dec 15, 2011
Submit BLAST Search
Search selected nucleotide database using blastn
Optional BLAST Parameters
Expect Threshold:
1e-200
1e-100
1e-50
1e-20
1e-10
1e-5
1e-4
1e-3
1e-2
1e-1
1
10
100
1000
Max Number of Alignments:
1
5
10
20
50
100
250
500
Max Number of Descriptions:
1
5
10
20
50
100
250
500
Word Length:
7
11
15
Filter:
none
dust
View Filter:
no
yes
Matrix:
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Strand:
both
top
bottom
Please report all problems using the BLAST tool to
sgr@plantbiology.msu.edu
.